r - geom_errorbar and geom_facet -

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the following code not display error bars:

rf.imp<- read.csv("importances_byaggregations.csv",head=true,sep=",") #changes when handling data  rf.imp$flux <- as.character(rf.imp$flux) rf.imp$flux<-factor(rf.imp$flux,levels=unique(rf.imp$flux)) rf.imp$aggregation <- as.character(rf.imp$aggregation) rf.imp$aggregation<-factor(rf.imp$aggregation,levels=unique(rf.imp$aggregation))  cbbpalette <- c("#f0e442", "#cc79a7","#e69f00","#56b4e9", "#009e73") # mimicking python colors  rf.imp$rel.influence<-rf.imp$rel.influence*100 rf.imp$sd<-rf.imp$sd*100  limits <- aes(ymax = rf.imp$rel.influence + rf.imp$sd, ymin=rf.imp$rel.influence - rf.imp$sd)  ggplot(rf.imp, aes(variable,rel.influence,fill=variable)) +    geom_bar(stat="identity",position="dodge") +  scale_fill_manual(values=cbbpalette)+   theme_bw(base_size = 32, base_family = "helvetica")+   xlab("")+   ylab("variable importance (%)")+   facet_grid(aggregation~flux)+   geom_errorbar(limits, width=0.5)+   scale_y_continuous(limits=c(-10,90))+   theme(legend.position="none",         strip.text.x = element_blank(),         strip.text.y = element_blank(),         panel.grid.major = element_blank(),         panel.grid.minor = element_blank(),         strip.background = element_blank(),         panel.border = element_rect(colour = "black"),         panel.border = element_rect(colour = "black", fill=na, size=1))

i obtaine following figure, geom_facets swaped.

enter image description here

however, this:

enter image description here

am doing wrong?

thanks!

your minimal example little long me dig into, suspect problem comes using absolute (rf.imp$...) references in error bar limits. if use

geom_errorbar(aes(ymax=rel.influence+sd,                   ymin=rel.influence-sd), width=0.5)

i think fix problem.


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